Infrakingdom

In biology, a kingdom is the second highest taxonomic rank, just below domain. Kingdoms are divided into smaller groups called phyla (singular phylum).

The hierarchy of biological classification's eight major taxonomic ranks. A domain contains one or more kingdoms. Intermediate minor rankings are not shown.

Traditionally, textbooks from Canada and the United States have used a system of six kingdoms (Animalia, Plantae, Fungi, Protista, Archaea/Archaebacteria, and Bacteria or Eubacteria), while textbooks in other parts of the world, such as Bangladesh, Brazil, Greece, India, Pakistan, Spain, and the United Kingdom have used five kingdoms (Animalia, Plantae, Fungi, Protista and Monera).

Some recent classifications based on modern cladistics have explicitly abandoned the term kingdom, noting that some traditional kingdoms are not monophyletic, meaning that they do not consist of all the descendants of a common ancestor. The terms flora (for plants), fauna (for animals), and, in the 21st century, funga (for fungi) are also used for life present in a particular region or time.

Definition and associated terms

When Carl Linnaeus introduced the rank-based system of nomenclature into biology in 1735, the highest rank was given the name "kingdom" and was followed by four other main or principal ranks: class, order, genus and species. Later two further main ranks were introduced, making the sequence kingdom, phylum or division, class, order, family, genus and species. In 1990, the rank of domain was introduced above kingdom.

Prefixes can be added so subkingdom (subregnum) and infrakingdom (also known as infraregnum) are the two ranks immediately below kingdom. Superkingdom may be considered as an equivalent of domain or empire or as an independent rank between kingdom and domain or subdomain. In some classification systems the additional rank branch (Latin: ramus) can be inserted between subkingdom and infrakingdom, e.g., Protostomia and Deuterostomia in the classification of Cavalier-Smith.

History

Two kingdoms of life

The classification of living things into animals and plants is an ancient one. Aristotle (384–322 BC) classified animal species in his History of Animals, while his pupil Theophrastus (c. 371–c. 287 BC) wrote a parallel work, the Historia Plantarum, on plants.

Carl Linnaeus (1707–1778) laid the foundations for modern biological nomenclature, now regulated by the Nomenclature Codes, in 1735. He distinguished two kingdoms of living things: Regnum Animale ('animal kingdom') and Regnum Vegetabile ('vegetable kingdom', for plants). Linnaeus also included minerals in his classification system, placing them in a third kingdom, Regnum Lapideum.

	Life   Regnum Animale (animals) Regnum Vegetabile ('vegetables'/plants)   Non‑life   Regnum Lapideum (minerals)

Three kingdoms of life

Haeckel's original (1866) conception of the three kingdoms of life, including the new kingdom Protista. Notice the inclusion of the cyanobacterium Nostoc with plants.

In 1674, Antonie van Leeuwenhoek, often called the "father of microscopy", sent the Royal Society of London a copy of his first observations of microscopic single-celled organisms. Until then, the existence of such microscopic organisms was entirely unknown. Despite this, Linnaeus did not include any microscopic creatures in his original taxonomy.

At first, microscopic organisms were classified within the animal and plant kingdoms. However, by the mid–19th century, it had become clear to many that "the existing dichotomy of the plant and animal kingdoms [had become] rapidly blurred at its boundaries and outmoded".

In 1860 John Hogg proposed the Protoctista, a third kingdom of life composed of "all the lower creatures, or the primary organic beings"; he retained Regnum Lapideum as a fourth kingdom of minerals. In 1866, Ernst Haeckel also proposed a third kingdom of life, the Protista, for "neutral organisms" or "the kingdom of primitive forms", which were neither animal nor plant; he did not include the Regnum Lapideum in his scheme. Haeckel revised the content of this kingdom a number of times before settling on a division based on whether organisms were unicellular (Protista) or multicellular (animals and plants).

	Life   Kingdom Protista or Protoctista Kingdom Plantae Kingdom Animalia   Non‑life   Regnum Lapideum (minerals)

Four kingdoms

The development of microscopy revealed important distinctions between those organisms whose cells do not have a distinct nucleus (prokaryotes) and organisms whose cells do have a distinct nucleus (eukaryotes). In 1937 Édouard Chatton introduced the terms "prokaryote" and "eukaryote" to differentiate these organisms.

In 1938, Herbert F. Copeland proposed a four-kingdom classification by creating the novel Kingdom Monera of prokaryotic organisms; as a revised phylum Monera of the Protista, it included organisms now classified as Bacteria and Archaea. Ernst Haeckel, in his 1904 book The Wonders of Life, had placed the blue-green algae (or Phycochromacea) in Monera; this would gradually gain acceptance, and the blue-green algae would become classified as bacteria in the phylum Cyanobacteria.

In the 1960s, Roger Stanier and C. B. van Niel promoted and popularized Édouard Chatton's earlier work, particularly in their paper of 1962, "The Concept of a Bacterium"; this created, for the first time, a rank above kingdom—a superkingdom or empire—with the two-empire system of prokaryotes and eukaryotes. The two-empire system would later be expanded to the three-domain system of Archaea, Bacteria, and Eukaryota.

Life	Empire Prokaryota Kingdom Monera Empire Eukaryota Kingdom Protista or Protoctista Kingdom Plantae Kingdom Animalia

Five kingdoms

The differences between fungi and other organisms regarded as plants had long been recognised by some; Haeckel had moved the fungi out of Plantae into Protista after his original classification, but was largely ignored in this separation by scientists of his time. Robert Whittaker recognized an additional kingdom for the Fungi. The resulting five-kingdom system, proposed in 1969 by Whittaker, has become a popular standard and with some refinement is still used in many works and forms the basis for new multi-kingdom systems. It is based mainly upon differences in nutrition; his Plantae were mostly multicellular autotrophs, his Animalia multicellular heterotrophs, and his Fungi multicellular saprotrophs.

The remaining two kingdoms, Protista and Monera, included unicellular and simple cellular colonies. The five kingdom system may be combined with the two empire system. In the Whittaker system, Plantae included some algae. In other systems, such as Lynn Margulis's system of five kingdoms, the plants included just the land plants (Embryophyta), and Protoctista has a broader definition.

Following publication of Whittaker's system, the five-kingdom model began to be commonly used in high school biology textbooks. But despite the development from two kingdoms to five among most scientists, some authors as late as 1975 continued to employ a traditional two-kingdom system of animals and plants, dividing the plant kingdom into subkingdoms Prokaryota (bacteria and cyanobacteria), Mycota (fungi and supposed relatives), and Chlorota (algae and land plants).

Life	Empire Prokaryota Kingdom Monera Empire Eukaryota Kingdom Protista or Protoctista Kingdom Plantae Kingdom Fungi Kingdom Animalia

Whittaker's five kingdom system (1969)

Kingdom Monera Branch Myxomonera Phylum Cyanophyta Phylum Myxobacteriae Branch Mastigomonera Phylum Eubacteriae Phylum Actinomycota Phylum Spirochaetae

Kingdom Protista Phylum Euglenophyta Phylum Chrysophyta Phylum Pyrrophyta Phylum Hyphochytridiomycota Phylum Plasmodiophoromycota Phylum Sporozoa Phylum Cnidosporidia Phylum Zoomastigina Phylum Sarcodina Phylum Ciliophora

Kingdom Plantae Subkingdom Rhodophycophyta Phylum Rhodophyta Subkingdom Phaeophycophyta Phylum Phaeophyta Subkingdom Euchlorophyta Branch Chlorophycophyta Phylum Chlorophyta Phylum Charophyta Branch Metaphyta Phylum Bryophyta Phylum Tracheophyta

Kingdom Fungi Subkingdom Gymnomycota Phylum Myxomycota Phylum Acrasiomycota Phylum Labyrinthulomycota Subkingdom Dimastigomycota Phylum Oomycota Subkingdom Eumycota Branch Opisthomastigomycota Phylum Chytridiomycota Branch Amastigomycota Phylum Zygomycota Phylum Ascomycota Phylum Basidiomycota

Kingdom Animalia Subkingdom Agnotozoa Phylum Mesozoa Subkingdom Parazoa Phylum Porifera Phylum Archaeocyatha † Subkingdom Eumetazoa Branch Radiata Phylum Cnidaria Phylum Ctenophora Branch Bilateria Grade Acoelomata Phylum Platyhelminthes Phylum Nemertea or Rhynchocoela Grade Pseudocoelomata Phylum Acanthocephala Phylum Aschelminthes Phylum Entoprocta or Kamptozoa Grade Coelomata Subgrade Schizocoela Phylum Bryozoa or Ectoprocta Phylum Brachiopoda Phylum Phoronida Phylum Mollusca Phylum Sipunculoidea Phylum Echiuroidea Phylum Annelida Phylum Arthropoda Subgrade Enterocoela Phylum Brachiata or Pogonophora Phylum Chaetognatha Phylum Echinodermata Phylum Hemichordata Phylum Chordata

Six kingdoms

In 1977, Carl Woese and colleagues proposed the fundamental subdivision of the prokaryotes into the Eubacteria (later called the Bacteria) and Archaebacteria (later called the Archaea), based on ribosomal RNA structure; this would later lead to the proposal of three "domains" of life, of Bacteria, Archaea, and Eukaryota. Combined with the five-kingdom model, this created a six-kingdom model, where the kingdom Monera is replaced by the kingdoms Bacteria and Archaea. This six-kingdom model is commonly used in recent US high school biology textbooks, but has received criticism for compromising the current scientific consensus. But the division of prokaryotes into two kingdoms remains in use with the recent seven kingdoms scheme of Thomas Cavalier-Smith, although it primarily differs in that Protista is replaced by Protozoa and Chromista.

Life	Domain Prokaryota Kingdom Eubacteria (Bacteria) Kingdom Archaebacteria (Archaea) Domain Eukaryota Kingdom Protista or Protoctista Kingdom Plantae Kingdom Fungi Kingdom Animalia

Eight kingdoms

Thomas Cavalier-Smith supported the consensus at that time, that the difference between Eubacteria and Archaebacteria was so great (particularly considering the genetic distance of ribosomal genes) that the prokaryotes needed to be separated into two different kingdoms. He then divided Eubacteria into two subkingdoms: Negibacteria (Gram-negative bacteria) and Posibacteria (Gram-positive bacteria). Technological advances in electron microscopy allowed the separation of the Chromista from the Plantae kingdom. Indeed, the chloroplast of the chromists is located in the lumen of the endoplasmic reticulum instead of in the cytosol. Moreover, only chromists contain chlorophyll c. Since then, many non-photosynthetic phyla of protists, thought to have secondarily lost their chloroplasts, were integrated into the kingdom Chromista.

Finally, some protists lacking mitochondria were discovered. As mitochondria were known to be the result of the endosymbiosis of a proteobacterium, it was thought that these amitochondriate eukaryotes were primitively so, marking an important step in eukaryogenesis. As a result, these amitochondriate protists were separated from the protist kingdom, giving rise to the, at the same time, superkingdom and kingdom Archezoa. This superkingdom was opposed to the Metakaryota superkingdom, grouping together the five other eukaryotic kingdoms (Animalia, Protozoa, Fungi, Plantae and Chromista). This was known as the Archezoa hypothesis, which has since been abandoned; later schemes did not include the Archezoa–Metakaryota divide.

Life	Superkingdom Prokaryota Kingdom Eubacteria Kingdom Archaebacteria Superkingdom Archezoa‡ Kingdom Archezoa‡ Superkingdom Metakaryota‡ Kingdom Protozoa Kingdom Chromista Kingdom Plantae Kingdom Fungi Kingdom Animalia

‡ No longer recognized by taxonomists.

Six kingdoms (1998)

In 1998, Cavalier-Smith published a six-kingdom model, which has been revised in subsequent papers. The version published in 2009 is shown below. Cavalier-Smith no longer accepted the importance of the fundamental Eubacteria–Archaebacteria divide put forward by Woese and others and supported by recent research. The kingdom Bacteria (sole kingdom of empire Prokaryota) was subdivided into two sub-kingdoms according to their membrane topologies: and Negibacteria. Unibacteria was divided into phyla Archaebacteria and Posibacteria; the bimembranous-unimembranous transition was thought to be far more fundamental than the long branch of genetic distance of Archaebacteria, viewed as having no particular biological significance.

Cavalier-Smith does not accept the requirement for taxa to be monophyletic ("holophyletic" in his terminology) to be valid. He defines Prokaryota, Bacteria, Negibacteria, Unibacteria, and Posibacteria as valid paraphyla (therefore "monophyletic" in the sense he uses this term) taxa, marking important innovations of biological significance (in regard of the concept of biological niche).

In the same way, his paraphyletic kingdom Protozoa includes the ancestors of Animalia, Fungi, Plantae, and Chromista. The advances of phylogenetic studies allowed Cavalier-Smith to realize that all the phyla thought to be archezoans (i.e. primitively amitochondriate eukaryotes) had in fact secondarily lost their mitochondria, typically by transforming them into new organelles: Hydrogenosomes. This means that all living eukaryotes are in fact metakaryotes, according to the significance of the term given by Cavalier-Smith. Some of the members of the defunct kingdom Archezoa, like the phylum Microsporidia, were reclassified into kingdom Fungi. Others were reclassified in kingdom Protozoa, like Metamonada which is now part of infrakingdom Excavata.

Because Cavalier-Smith allows paraphyly, the diagram below is an 'organization chart', not an 'ancestor chart', and does not represent an evolutionary tree.

Life	Empire Prokaryota Kingdom Bacteria — includes Archaebacteria as part of a subkingdom Empire Eukaryota Kingdom Protozoa — e.g. Amoebozoa, Choanozoa, Excavata Kingdom Chromista — e.g. Alveolata, cryptophytes, Heterokonta (Brown Algae, Diatoms etc.), Haptophyta, Rhizaria Kingdom Plantae — e.g. glaucophytes, red and green algae, land plants Kingdom Fungi Kingdom Animalia

Cavalier-Smith's six kingdom system (1998)

Kingdom Bacteria     Subkingdom Negibacteria         Infrakingdom             Superphylum Eobacteria         Phylum Heliobacteria         Phylum Hadobacteria           Subphylum Chlorobacteria           Subphylum       Superphylum         Phylum Spirochaetae           Subphylum           Subphylum     Infrakingdom       Superphylum         Phylum Sphingobacteria           Subphylum           Subphylum Flavobacteria         Phylum Eurybacteria           Subphylum           Subphylum Fusobacteria           Subphylum         Phylum Cyanobacteria           Subphylum Gloeobacteria           Subphylum         Phylum Proteobacteria           Subphylum             Infraphylum Alphabacteria             Infraphylum           Subphylum       Superphylum Planctobacteria         Phylum Planctobacteria   Subkingdom     Infrakingdom Posibacteria       Phylum Posibacteria         Subphylum           Infraphylum Endobacteria           Infraphylum Actinobacteria         Subphylum     Infrakingdom Archaebacteria       Phylum Mendosicutes         Subphylum Euryarcheota           Infraphylum Halomebacteria           Infraphylum         Subphylum

Kingdom Protozoa   Subkingdom Archezoa     Phylum Metamonada       Subphylum       Subphylum     Phylum Trichozoa       Subphylum Anaeromonada       Subphylum   Subkingdom Neozoa     Infrakingdom Sarcomastigota       Phylum         Subphylum Apusozoa         Subphylum         Subphylum Choanozoa       Phylum Cercozoa         Subphylum Phytomyxa         Subphylum Reticulofilosa         Subphylum Monadofilosa       Phylum Foraminifera       Phylum Amoebozoa         Subphylum Lobosa         Subphylum Conosa           Infraphylum Archamoebae           Infraphylum Mycetozoa             Superclass             Superclass Dictyostelia     Infrakingdom Discicristata       Phylum Percolozoa         Subphylum         Subphylum Pseudociliata       Phylum Euglenozoa         Subphylum         Subphylum     Infrakingdom Alveolata       Superphylum Miozoa         Phylum           Subphylum           Subphylum Dinoflagellata         Phylum Sporozoa           Subphylum           Subphylum Coccidiomorpha           Subphylum       Superphylum         Phylum Ciliophora           Subphylum           Subphylum           Subphylum     Infrakingdom Actinopoda       Phylum Heliozoa       Phylum Radiozoa         Subphylum         Subphylum Radiolaria

Kingdom Fungi   Subkingdom     Phylum       Subphylum         Class Chytridiomycetes           Subclass           Subclass         Class       Subphylum         Infraphylum           Class         Infraphylum Zygomycotina           Superclass             Class             Class           Superclass             Class Zygomycetes               Subclass               Subclass             Class               Subclass               Subclass                 Superorder                 Superorder     Phylum Microsporidia       Class       Class Microsporea         Subclass         Subclas   Subkingdom     Phylum Ascomycota       Subphylum         Class Taphrinomycetes         Class         Class           Subclass           Subclass Saccharomycetidae       Subphylum         Class Discomycetes           Subclass           Subclass           Subclass         Class Pyrenomycetes           Subclass           Subclass         Class           Subclass           Subclass         Class     Phylum Basidiomycota       Subphylum         Class           Subclass           Subclass       Subphylum Orthomycotina         Superclass           Class         Superclass           Class             Subclass Tremellomycetidae             Subclass             Subclass           Class Homobasidiomycetes             Subclass             Subclass

Kingdom Animalia   Subkingdom Radiata     Infrakingdom Spongiaria       Phylum Porifera         Subphylum Hyalospongiae         Subphylum Calcispongiae         Subphylum Archaeocyatha †     Infrakingdom Coelenterata       Phylum Cnidaria         Subphylum Anthozoa         Subphylum Medusozoa     Infrakingdom Placozoa       Phylum Placozoa   Subkingdom Myxozoa     Phylum Myxosporidia   Subkingdom Bilateria     Branch Protostomia       Infrakingdom         Superphylum Polyzoa           Phylum Bryozoa             Subphylum Gymnolaemata             Subphylum           Phylum Kamptozoa             Subphylum Entoprocta             Subphylum Cycliophora         Superphylum           Phylum Mollusca             Subphylum Bivalvia             Subphylum               Infraphylum Univalvia               Infraphylum               Infraphylum Cephalopoda           Phylum Brachiozoa             Subphylum Brachiopoda             Subphylum Phoronida         Superphylum Sipuncula           Phylum Sipuncula         Superphylum           Phylum Annelida             Subphylum Polychaeta               Infraphylum               Infraphylum             Subphylum Clitellata             Subphylum Echiura             Subphylum Pogonophora           Phylum Nemertina       Infrakingdom         Phylum Chaetognatha       Infrakingdom Ecdysozoa         Superphylum           Phylum Arthropoda             Subphylum               Infraphylum Pycnogonida               Infraphylum Chelicerata             Subphylum Trilobitomorpha †             Subphylum Mandibulata               Infraphylum Crustacea               Infraphylum Myriapoda               Infraphylum Insecta           Phylum Lobopoda             Subphylum Onychophora             Subphylum Tardigrada         Superphylum Nemathelminthes           Phylum Nemathelminthes             Subphylum               Infraphylum               Infraphylum Kinorhyncha             Subphylum Nematoida               Infraphylum Nematoda               Infraphylum Nematomorpha       Infrakingdom Platyzoa         Phylum Acanthognatha           Subphylum             Infraphylum Rotifera             Infraphylum Acanthocephala           Subphylum         Phylum Platyhelminthes           Subphylum Turbellaria             Infraphylum             Infraphylum Rhabditophora           Subphylum Neodermata             Infraphylum Trematoda             Infraphylum     Branch Deuterostomia       Infrakingdom Coelomopora         Phylum Hemichordata           Subphylum Pterobranchia           Subphylum Enteropneusta         Phylum Echinodermata           Subphylum Homalozoa           Subphylum Pelmatozoa             Infraphylum Blastozoa             Infraphylum Crinozoa           Subphylum Eleutherozoa             Infraphylum Asterozoa             Infraphylum Echinozoa       Infrakingdom Chordonia         Phylum           Subphylum Tunicata             Infraphylum Ascidiae             Infraphylum           Subphylum Appendicularia         Phylum Chordata           Subphylum Acraniata             Infraphylum Cephalochordata             Infraphylum Conodonta †           Subphylum Vertebrata             Infraphylum Agnatha             Infraphylum Gnathostomata   Subkingdom Mesozoa     Phylum Mesozoa

Kingdom Plantae   Subkingdom Biliphyta     Infrakingdom Glaucophyta       Phylum Glaucophyta     Infrakingdom Rhodophyta       Phylum Rhodophyta         Subphylum         Subphylum   Subkingdom Viridiplantae     Infrakingdom Chlorophyta       Phylum Chlorophyta         Subphylum Chlorophytina           Infraphylum           Infraphylum         Subphylum           Infraphylum           Infraphylum     Infrakingdom Cormophyta       Phylum Bryophyta         Subphylum Hepaticae         Subphylum Anthocerotae         Subphylum Musci           Infraphylum           Infraphylum       Phylum Tracheophyta         Subphylum           Infraphylum           Infraphylum           Infraphylum           Infraphylum Filices         Subphylum           Infraphylum Gymnospermae           Infraphylum Angiospermae

Kingdom Chromista   Subkingdom Cryptista     Phylum Cryptophyta   Subkingdom     Infrakingdom Heterokonta       Superphylum Sagenista         Phylum Sagenista           Subphylum Bicoecia           Subphylum         Phylum Ochrophyta           Subphylum Phaeista             Infraphylum             Infraphylum Chrysista           Subphylum Diatomeae         Phylum Bigyra           Subphylum Bigyromonada           Subphylum Pseudofungi           Subphylum Opalinata     Infrakingdom Haptophyta       Phylum Haptophyta

Seven kingdoms

Cavalier-Smith and his collaborators revised their classification in 2015. In this scheme they introduced two superkingdoms of Prokaryota and Eukaryota and seven kingdoms. Prokaryota have two kingdoms: Bacteria and Archaea. (This was based on the consensus in the Taxonomic Outline of Bacteria and Archaea, and the Catalogue of Life). The Eukaryota have five kingdoms: Protozoa, Chromista, Plantae, Fungi, and Animalia. In this classification a protist is any of the eukaryotic unicellular organisms.

Life	Superkingdom Prokaryota Kingdom Bacteria Kingdom Archaea Superkingdom Eukaryota Kingdom Protozoa — e.g. Amoebozoa, Choanozoa, Excavata Kingdom Chromista — e.g. Alveolata, cryptophytes, Heterokonta (Brown Algae, Diatoms etc.), Haptophyta, Rhizaria Kingdom Plantae — e.g. glaucophytes, red and green algae, land plants Kingdom Fungi Kingdom Animalia

Summary

Linnaeus 1735	Haeckel 1866	Chatton 1925	Copeland 1938	Whittaker 1969	Woese et al. 1977	Woese et al. 1990	Cavalier-Smith 1993	Cavalier-Smith 1998	Ruggiero et al. 2015
—	—	2 empires	2 empires	2 empires	2 empires	3 domains	3 superkingdoms	2 empires	2 superkingdoms
2 kingdoms	3 kingdoms	—	4 kingdoms	5 kingdoms	6 kingdoms	—	8 kingdoms	6 kingdoms	7 kingdoms
—	Protista	Prokaryota	Monera	Monera	Eubacteria	Bacteria	Eubacteria	Bacteria	Bacteria
					Archaebacteria	Archaea	Archaebacteria		Archaea
		Eukaryota	Protista	Protista	Protista	Eucarya	Archezoa	Protozoa	Protozoa
							Protozoa
							Chromista	Chromista	Chromista
Vegetabilia	Plantae		Plantae	Plantae	Plantae		Plantae	Plantae	Plantae
				Fungi	Fungi		Fungi	Fungi	Fungi
Animalia	Animalia		Animalia	Animalia	Animalia		Animalia	Animalia	Animalia

The kingdom-level classification of life is still widely employed as a useful way of grouping organisms, notwithstanding some problems with this approach:

• Kingdoms such as Protozoa represent grades rather than clades, and so are rejected by phylogenetic classification systems.
• The most recent research does not support the classification of the eukaryotes into any of the standard systems. In 2009, Andrew Roger and Alastair Simpson emphasized the need for diligence in analyzing new discoveries: "With the current pace of change in our understanding of the eukaryote tree of life, we should proceed with caution." Kingdoms are rarely used in academic phylogeny and are more common in introductory education, where 5-6 kingdom models are preferred.

Beyond traditional kingdoms

While the concept of kingdoms continues to be used by some taxonomists, there has been a movement away from traditional kingdoms, as they are no longer seen as providing a cladistic classification, where there is emphasis in arranging organisms into natural groups.

Three domains of life

A phylogenetic tree based on rRNA data showing Woese's three-domain system. All smaller branches can be considered kingdoms.

Based on RNA studies, Carl Woese thought life could be divided into three large divisions and referred to them as the "three primary kingdom" model or "urkingdom" model.

In 1990, the name "domain" was proposed for the highest rank. This term represents a synonym for the category of dominion (lat. dominium), introduced by Moore in 1974. Unlike Moore, Woese et al. (1990) did not suggest a Latin term for this category, which represents a further argument supporting the accurately introduced term dominion.

Woese divided the prokaryotes (previously classified as the Kingdom Monera) into two groups, called Eubacteria and Archaebacteria, stressing that there was as much genetic difference between these two groups as between either of them and all eukaryotes.

Life	Domain Bacteria (Eubacteria) Domain Archaea (Archaebacteria) Domain Eukarya (Eukaryota)

According to genetic data, although eukaryote groups such as plants, fungi, and animals may look different, they are more closely related to each other than they are to either the Eubacteria or Archaea. It was also found that the eukaryotes are more closely related to the Archaea than they are to the Eubacteria. Although the primacy of the Eubacteria-Archaea divide has been questioned, it has been upheld by subsequent research. There is no consensus on how many kingdoms exist in the classification scheme proposed by Woese.

Eukaryotic supergroups

In 2004, a review article by Simpson and Roger noted that the Protista were "a grab-bag for all eukaryotes that are not animals, plants or fungi". They held that only monophyletic groups should be accepted as formal ranks in a classification and that – while this approach had been impractical previously (necessitating "literally dozens of eukaryotic 'kingdoms'") – it had now become possible to divide the eukaryotes into "just a few major groups that are probably all monophyletic".

On this basis, the diagram opposite (redrawn from their article) showed the real "kingdoms" (their quotation marks) of the eukaryotes. A classification which followed this approach was produced in 2005 for the International Society of Protistologists, by a committee which "worked in collaboration with specialists from many societies". It divided the eukaryotes into the same six "supergroups". The published classification deliberately did not use formal taxonomic ranks, including that of "kingdom".

Life

Domain Bacteria   prokaryotic Bacteria Domain Archaea   prokaryotic Archaeans Domain Eukaryota   Excavata   various flagellate protozoa   Amoebozoa   most lobose amoeboids and slime moulds   Opisthokonta   animals, fungi, choanoflagellates, etc.   Rhizaria   Foraminifera, Radiolaria, and various other amoeboid protozoa   Chromalveolata   Stramenopiles (Brown Algae, Diatoms, etc.), Haptophyta, Cryptophyta (or cryptomonads), and Alveolata   Archaeplastida (or Primoplantae)  Land plants, green algae, red algae, and glaucophytes

One hypothesis of eukaryotic relationships depicted by Alastair Simpson

In this system the multicellular animals (Metazoa) are descended from the same ancestor as both the unicellular choanoflagellates and the fungi which form the Opisthokonta. Plants are thought to be more distantly related to animals and fungi.

However, in the same year as the International Society of Protistologists' classification was published (2005), doubts were being expressed as to whether some of these supergroups were monophyletic, particularly the Chromalveolata, and a review in 2006 noted the lack of evidence for several of the six proposed supergroups.

As of 2019^[update], there is widespread agreement that the Rhizaria belong with the Stramenopiles and the Alveolata, in a clade dubbed the SAR supergroup, so that Rhizaria is not one of the main eukaryote groups.

Comparison of top level classification

Some authors have added non-cellular life to their classifications. This can create a "superdomain" called "Acytota", also called "Aphanobionta", of non-cellular life; with the other superdomain being "cytota" or cellular life. The eocyte hypothesis proposes that the eukaryotes emerged from a phylum within the archaea called the Thermoproteota (formerly known as eocytes or Crenarchaeota).

Taxonomical root node	Two superdomains (controversial)	Two empires	Three domains	Five Dominiums	Five kingdoms	Six kingdoms	Eocyte hypothesis
Biota / Vitae / Life	Acytota / Aphanobionta non-cellular life			Virusobiota (Viruses, Viroids)
				Prionobiota (Prions)
	Cytota cellular life	Prokaryota / Procarya (Monera)	Bacteria	Bacteria	Monera	Eubacteria	Bacteria
			Archaea	Archaea		Archaebacteria	Archaea including eukaryotes
		Eukaryota / Eukarya			Protista
					Fungi
					Plantae
					Animalia

Viruses

The International Committee on Taxonomy of Viruses uses the taxonomic rank "kingdom" in the classification of viruses (with the suffix -virae); but this is beneath the top level classifications of realm and subrealm.

There is ongoing debate as to whether viruses can be included in the tree of life. The arguments against include the fact that they are obligate intracellular parasites that lack metabolism and are not capable of replication outside of a host cell. Another argument is that their placement in the tree would be problematic, since it is suspected that viruses have various evolutionary origins, and they have a penchant for harvesting nucleotide sequences from their hosts.

On the other hand, there are arguments in favor of their inclusion. One of these comes from the discovery of unusually large and complex viruses, such as Mimivirus, that possess typical cellular genes.

See also

• Biology portal

• Cladistics
• Phylogenetics
• Systematics
• Taxonomy

Notes

1. Compared to the version Cavalier-Smith published in 2004, the alveolates and the rhizarians have been moved from Kingdom Protozoa to Kingdom Chromista.

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Further reading

• Pelentier, B. (2007-2015). Empire Biota: a comprehensive taxonomy, . [Historical overview.]
• Peter H. Raven and Helena Curtis (1970), Biology of Plants, New York: Worth Publishers. [Early presentation of five-kingdom system.]

External links

• A Brief History of the Kingdoms of Life at Earthling Nature
• The five kingdom concept Archived 2021-11-07 at the Wayback Machine
• Whittaker's classification